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The external data sources integrated into the ProKware protein knowledge database
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The external data sources integrated into the ProKware protein knowledge database
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The external data sources integrated into the ProKware protein knowledge database
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The secretomes of four isolates of V. inaequalis and one isolate of V. pirina . Annotations were based on gene ontology analysis including interrogation of <t>NCBI</t> <t>RefSeq</t> , InterPro , UniRef , ExPASy UniProtKB/Swiss-Prot and ExPASy Prosite , CAZyme identification using the CAT server and BLASTp searches against the NCBI non-redundant database . Small secreted proteins (SSPs) include predicted proteins with similarity to known effectors and proteins with no known function, either with or without putative conserved motifs identified by PfamScan [ – ]
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The secretomes of four isolates of V. inaequalis and one isolate of V. pirina . Annotations were based on gene ontology analysis including interrogation of <t>NCBI</t> <t>RefSeq</t> , InterPro , UniRef , ExPASy UniProtKB/Swiss-Prot and ExPASy Prosite , CAZyme identification using the CAT server and BLASTp searches against the NCBI non-redundant database . Small secreted proteins (SSPs) include predicted proteins with similarity to known effectors and proteins with no known function, either with or without putative conserved motifs identified by PfamScan [ – ]
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The secretomes of four isolates of V. inaequalis and one isolate of V. pirina . Annotations were based on gene ontology analysis including interrogation of <t>NCBI</t> <t>RefSeq</t> , InterPro , UniRef , ExPASy UniProtKB/Swiss-Prot and ExPASy Prosite , CAZyme identification using the CAT server and BLASTp searches against the NCBI non-redundant database . Small secreted proteins (SSPs) include predicted proteins with similarity to known effectors and proteins with no known function, either with or without putative conserved motifs identified by PfamScan [ – ]
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The secretomes of four isolates of V. inaequalis and one isolate of V. pirina . Annotations were based on gene ontology analysis including interrogation of <t>NCBI</t> <t>RefSeq</t> , InterPro , UniRef , ExPASy UniProtKB/Swiss-Prot and ExPASy Prosite , CAZyme identification using the CAT server and BLASTp searches against the NCBI non-redundant database . Small secreted proteins (SSPs) include predicted proteins with similarity to known effectors and proteins with no known function, either with or without putative conserved motifs identified by PfamScan [ – ]
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The secretomes of four isolates of V. inaequalis and one isolate of V. pirina . Annotations were based on gene ontology analysis including interrogation of <t>NCBI</t> <t>RefSeq</t> , InterPro , UniRef , ExPASy UniProtKB/Swiss-Prot and ExPASy Prosite , CAZyme identification using the CAT server and BLASTp searches against the NCBI non-redundant database . Small secreted proteins (SSPs) include predicted proteins with similarity to known effectors and proteins with no known function, either with or without putative conserved motifs identified by PfamScan [ – ]
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Image Search Results


The external data sources integrated into the ProKware protein knowledge database

Journal: Nucleic Acids Research

Article Title: ProKware: integrated software for presenting protein structural properties in protein tertiary structures

doi: 10.1093/nar/gkl235

Figure Lengend Snippet: The external data sources integrated into the ProKware protein knowledge database

Article Snippet: The InterPro (Release 8.0) contains 11 007 entries and InterDom contains 60 850 domain–domain interactions.

Techniques: Sequencing

The secretomes of four isolates of V. inaequalis and one isolate of V. pirina . Annotations were based on gene ontology analysis including interrogation of NCBI RefSeq , InterPro , UniRef , ExPASy UniProtKB/Swiss-Prot and ExPASy Prosite , CAZyme identification using the CAT server and BLASTp searches against the NCBI non-redundant database . Small secreted proteins (SSPs) include predicted proteins with similarity to known effectors and proteins with no known function, either with or without putative conserved motifs identified by PfamScan [ – ]

Journal: BMC Genomics

Article Title: Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

doi: 10.1186/s12864-017-3699-1

Figure Lengend Snippet: The secretomes of four isolates of V. inaequalis and one isolate of V. pirina . Annotations were based on gene ontology analysis including interrogation of NCBI RefSeq , InterPro , UniRef , ExPASy UniProtKB/Swiss-Prot and ExPASy Prosite , CAZyme identification using the CAT server and BLASTp searches against the NCBI non-redundant database . Small secreted proteins (SSPs) include predicted proteins with similarity to known effectors and proteins with no known function, either with or without putative conserved motifs identified by PfamScan [ – ]

Article Snippet: Annotations were based on gene ontology analysis including interrogation of NCBI RefSeq [ ], InterPro [ ], UniRef [ ], ExPASy UniProtKB/Swiss-Prot [ ] and ExPASy Prosite [ ], CAZyme identification using the CAT server [ ] and BLASTp searches against the NCBI non-redundant database [ ].

Techniques:

Predicted proteins present in the V IS set from the secretome of Venturia inaequalis isolate Vi1. Annotations were based on gene ontology analysis including interrogation of NCBI RefSeq , InterPro , UniRef , ExPASy UniProtKB/Swiss-Prot and ExPASy Prosite , CAZyme identification using the CAT server and BLASTp searches against the NCBI non-redundant database . Small secreted proteins (SSPs) include predicted proteins with similarity to known effectors and proteins with no known function, either with or without putative conserved motifs identified by PfamScan [ – ]. The order of the categories in the legend is the same as that in the chart

Journal: BMC Genomics

Article Title: Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range

doi: 10.1186/s12864-017-3699-1

Figure Lengend Snippet: Predicted proteins present in the V IS set from the secretome of Venturia inaequalis isolate Vi1. Annotations were based on gene ontology analysis including interrogation of NCBI RefSeq , InterPro , UniRef , ExPASy UniProtKB/Swiss-Prot and ExPASy Prosite , CAZyme identification using the CAT server and BLASTp searches against the NCBI non-redundant database . Small secreted proteins (SSPs) include predicted proteins with similarity to known effectors and proteins with no known function, either with or without putative conserved motifs identified by PfamScan [ – ]. The order of the categories in the legend is the same as that in the chart

Article Snippet: Annotations were based on gene ontology analysis including interrogation of NCBI RefSeq [ ], InterPro [ ], UniRef [ ], ExPASy UniProtKB/Swiss-Prot [ ] and ExPASy Prosite [ ], CAZyme identification using the CAT server [ ] and BLASTp searches against the NCBI non-redundant database [ ].

Techniques: